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Seminar Genomics
Seminar Genomics
| Lecturers: |
Daniel Richter and Suparna Mitra |
| Type of
course: |
Seminar for BSc Bioinformatic students. Credits: 4 LP / 2SWS |
| Time
and location: |
Thursday, 9:15 -10:00, A104 |
| First
session: |
16 Th October 2008 |
| Office
hours/contact: |
Daniel Richter |
| Obligatory
registration by
email with matriculation number to: |
Daniel Richter |
| Maximal number of participants: |
9 |
Outline and scope:
Presentation topics will be:
- the history and outlook of DNA sequencing
- current trends of DNA sequencing approaches
- gene finding
- gene annotation
- etc.
Literature for the different presentations are up-to-date scientific reviews and articles which will be provided to the speakers.
Further autonomous literature search is expected.
Each speaker will hold a ~30 min talk (+ 10min discussion) and present the relevant results to all participants.Presentations will be given in German (or English if desired.)
Some hints on how to pass this seminar successfully can be
found in this pdf.
To sign up for this seminar please send an email with your matriculation number to Daniel Richter
| No. |
Title |
Speaker |
Advisor | Date |
| 1 |
History of DNA sequencing | Katrin Sippel | D. Richter |
27.11.2008 |
| 2 |
Next generation sequencing technologies | Volker Grabe | J.D. Klein | 04.12.2008 |
| 3 |
Overview genome assembly/EDENA assembler | Karin Klotzbuecher | J.D. Klein | 11.12.2008 |
| 4 |
Velvet and Euler assembler | Julian Zipperer | J.D. Klein | 18.12.2008 |
| 5+6 |
Comparative Assembly Comparative Assembly 2 (ABBA) |
Christoph Schmidt Benjamin Albrecht |
J.D. Klein | 15.01.2009 |
| 7 |
Genome annotation |
Max Schubach |
D. Richter |
22.01.2009 |
| 8+9 |
Metagenomics 1 Metagenomics 2 |
Paul Rupek Andreas Schaetzle |
S. Mitrar | 29.01.2009 |
| 10+11 |
Ontologies in Biology (GeneOntology) Microbiology in the post-genomic era |
Zeynep Kosaloglu Tim Scheurenbrand |
D. Richter | 05.02.2009 |
