Practical Course: "Bioinformatics Software Tools"
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| General Subject: |
Practical informatics |
Tutors:
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Daniel Richter, Juliane Klein, Alexander Auch and Prof. D.
Huson
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Time:
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18.02.08 - 29.02.08, 9:00-17:00
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Preliminary discussion:
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Dienstag, 12.02.08, 17:00Uhr
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| Amount: |
4 SWS, examinable: 2 SWS |
| Location: |
Computer room C311
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Office hours:
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by appointment
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Enrolment:
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by eMail to Daniel Richter
with indication of complete name, matricle number and WSI login ID
Maximum number of participants: 8 |
| Description: |
In this tutorial we want to look at several software tools that are widely used
at the moment.
E.g.: Programs for sequence comparison (pairwise and multiple alignments,
e.g. ClustalW, T-Coffee, Muscle), programs for phylogenetic reconstruction
(e.g. Phylip, Paup, SplitsTree), database search (e.g. BLAST),
visualization (e.g. CGViz), genome finishing, metagenomics (Megan) and
others. |
Requirements for admission:
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This course is only for Master and Diploma students.
completed Vordiplom Bioinformatik, the lectures
"Algorithms in Bioinformatics I and II" are recommended.
Experiences with Java are needed (and a scripting language (Python, Perl, bash, ...)). |
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Course language
The teaching language is German or English if any participant does not
understand German.
For written documents (hand-outs, protocols etc.)
English is recommended.
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