Practical Course: "Bioinformatics Software Tools"
| General Subject: |
Practical informatics |
Tutors:
|
Alexander Auch, Johannes Fischer, Juliane Klein,
Suparna Mitra, Daniel Richter, Regula Rupp and Prof. Daniel
Huson |
Time:
|
29.9.-10.10.2008, 9:00-17:00
|
|
Preliminary discussion:
|
Mo, May 5, 15:00, C306
|
| Credits: |
Diploma students: 4 SWS, examinable: 2 SWS,
MSc Students: 8 LP (Modules: Bioinformatik
or
Praktische Bioinformatik) |
| Location: |
C306 and computer lab C311
|
Office hours:
|
by appointment
|
Enrolment:
|
by eMail to Daniel Richter
with indication of complete name, student number and WSI login ID
Maximum number of participants: 8 |
| Description: |
In this tutorial we want to look at several
software
tools that are widely used
at the moment.
E.g.: Programs for sequence comparison (pairwise and multiple
alignments,
e.g. ClustalW, T-Coffee, Muscle), programs for phylogenetic
reconstruction
(e.g. Phylip, Paup, SplitsTree), database search (e.g. BLAST),
visualization (e.g. CGViz), genome finishing, metagenomics (Megan) and
others. |
Requirements for
admission:
|
| This course is only for Master and Diploma
students. completed Vordiplom Bioinformatik, the lectures
"Algorithms in Bioinformatics I and II" or "Bioinformatics I and II"
are recommended. Knowledge of Java and a scripting language
(Python, Perl, bash,
...) is required. |
|
Course language
The teaching language is German and English.
For written documents (hand-outs, protocols etc.)
English is recommended.
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