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Bioinformatics Software Tools

 

Practical Course: "Bioinformatics Software Tools"

 

 
General Subject: Practical informatics
Tutors:
 Tobias Dezulian, Christian Rausch und Prof. D. Huson
Time:
September 25 - Oktober 6 2006, 9:00-17:00
Amount: 4 SWS,  examinable: 2 SWS
Location: Computer room C311
Office hours:
 by appointment
Home page: http://www-ab.informatik.uni-tuebingen.de/teaching/ss05/tool/welcome.html
Enrolement:
 dezulian@informatik.uni-tuebingen.de with indication of complete name and matricle number
Description:
In this tutorial we want to look at several software tools that are widely used at the moment.
E.g.: Programs for sequence comparison (pairwise and multiple alignments, e.g. ClustalW, T-Coffee), programs for phylogenetic reconstruction (e.g. Phylip, SplitsTree), database search (e.g. BLAST, HMMer), comparative sequence assembly (OSLay), Gene finding (e.g. genscan) and others.
Requirements for admission:
completed Vordiplom Bioinformatik, the lectures "Algorithms in Bioinformatics I and II" are recommended.

 

 

Course language

The teaching language is German or English if any participant does not understand German.

For written documents (hand-outs, protocols etc.) English is recommended.

 

 

Day
 Topic
1
 Sequence analysis with the EMBOSS package
Working material:
pUC19.seq: sequence of a coloning vector in gcg format
Exercise: A study of a human protein
















 

 

 

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