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- Info
Grundlagen der Bioinformatik
Proseminar "Grundlagen der Bioinformatik",
SS 2006
| Research
Group: |
Algorithms in Bioinformatics
|
| Lecturer/Tutor: |
Auch,
Richter,
Klöpper |
| Amount: |
2 SWS |
| Ranges: |
recommended for students in the 4th
semester of bioinformatics
|
| Test
subjects: |
Vordiplom |
| |
| Start: |
Tue, 25. April 2006, 9:00st.
|
| Preliminary discussion: |
Tue, 25. April 2006, 9:00st
|
Location:
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A302, Sand 13.
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Subscription:
|
Write an email with the preferred subject of your talk to A. Auch
(restricted to 12 participants)
The course is full! No more subscriptions are possible. |
| Consultation hours: |
by appointment
|
| Homepage: |
http://www-ab.informatik.uni-tuebingen.de/teaching/ss06/proseminar/welcome.html |
| Rotation: |
every summer semester
|
| Conditions
for admission: |
none
|
| |
| Description |
In this seminar some basic algorithms in bioinformatics are addressed.
Topics are: Basic Concepts in Molecular Biology, Pairwise Sequence
Alignment, Multiple Sequence Alignment, BLAST, Phylogenetic Tree
Reconstruction Methods, Computer Based Gene Predictions,
Genome Rearrangements, Physical Mapping, DNA Fragment Assembly, Microarrays
(DNA Chips).
The studends are supposed to work out and perform a approx. 35-45 min.
presentation to a given topic based on the given literature.
In case of problems during the preparation the students should contact
their tutor for help.
Important Dates:
- 2-3 weeks before the presentation, the student has to contact the tutor.
- One week before the presentation the student has
to hand out a final version of the required 10-15 page report
(a summary of
the topic in style of a scientific publication).
The report should describe
and discuss the topic logically, didactically, and structured.
- One week before the presentation the student has
to hand out a pre-version of the slides
- On friday before the talk, the final version of the slides are required.
General
goals of a proseminar: click here (overview in German)
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| Literature |
will be given in the proseminar
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| |
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Language
German and English are equally admitted languages for report, slides, and the presentations.
Layout
The layout of the report should be geared to the
template documents that can be found here.
Additionally the first page and the first slide should contain the
title of the proseminar and the presentation, the student's name and
email address and the tutor's name and the date.
Citing and quotation
If figures, formulations or whole sentences are taken verbally from the
references it has to be marked as a citation; this is also the case if
the reference is a www document, there the exact url and the author of
the text has to be cited.
Assessment
The quality of the presentaton and the report
will be assessed in respect of content and rhetoric and a total grade
will be given by the tutors.
|
|
Overview on speakers, subjects,
advisors and dates of talks
(preliminary overview, the order
of talks may still be changed)
No.
|
Speaker
|
Title
|
Advisor |
Date
|
1
|
Carina Walter |
Basic concepts of molecular
Biology
|
A. Auch
|
09.05.2006
|
2
|
Roland Keller |
Pairwise sequence
alignment
|
T. Kloepper
|
16.05.2006
|
3
|
Daniel Lehle |
Multiple sequence
alignment
|
A. Auch |
23.05.2006
|
4
|
Johannes Stephan |
BLAST
|
A. Auch |
30.05.2006
|
5
|
Stephan Körner |
Phylogeny 1 |
A. Auch |
13.06.2006 08:00
|
6
|
Martina Krause |
Phylogeny 2 |
T. Kloepper |
13.06.2006 09:00
|
7
|
Benjamin Albrecht |
Genome rearrangements |
D. Richter |
20.06.2006
|
8
|
Thomas Bonfert |
Computer-aided gene prediction |
A. Auch |
27.06.2006
|
9
|
Stefan Raue |
Micro-arrays (DNA-chips) |
A. Auch |
04.07.2006
|
10
|
Christoph Schmidt |
Physical mapping |
D. Richter |
11.07.2006
|
11
|
Johannes Wollnik |
RNA structure prediction |
D. Richter |
18.07.2006
|
12
|
Philipp Gaiser |
DNA fragment assembly.
After
the talk: concluding discussion and handing out of
certificates
|
D. Richter |
25.07.2006
|
Personal Pages: A. Auch,
D. Richter,
T. Kloepper
|
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