Course:
Algorithms in
Bioinformatics II
| Lecturer |
Prof.
Dr. Daniel Huson
|
| Office hours |
Mondays, 16-18h, Office C310a, Sand 14 |
| Times |
Mo 10:15-12:00, Mi 11:15-13:00 |
| Credits |
4 SWS lectures+2 SWS Übungen |
| Start |
28. April 2003
|
| Where |
Mo: Lecture theater 2, Sand 6/7, Wed:
A301, Sand 13/14
|
| Turnus |
yearly in SS |
| Area |
Practical CS |
Problem Session Group 1
|
Tue,
16.15-18h, Large Seminar Room, Sand 6 |
Problem
Session Group 2
|
Wed,
8.00-10h, Small Seminar Room, Sand 6
|
Problem
Session Group 3
|
Wed,
16.15-18h, Large Seminar Room, Sand 6 |
Problem Session Group 4
|
Tue,
16.15-18h,
Lecture Hall A301, Sand 1/13 |
Contents:
13. HMMs
14. Gene prediction
15. Suffix trees
16. Suffix arrays
17. Genome Assembly
18. Sequencing from compomers *
19. DNA arrays
20. Peptide sequencing (script
by Knut Reinert) *
Download the script here.
*) Dieses
Kapitel
ist nicht prüfungsrelevant.
Assignments:
Assignment1
Java
Assignment2 Java
Assignment3
Java
Assignment4
Assignment5
Assignment6
Java
Assignment7
Java
Assignment8
Assignment9
Assignment10
Assignment11
Assignment12
Assignment13
Java
Authorship:
These lectures, script, Java files and assignments were
developed at the ZBIT by Daniel Huson. Parts of this material is used
in a modified form in bioinformatics courses at the FU Berlin and at
Uppsala University.
|
Teaching