Course:
Algorithms in
Bioinformatics II
| Lecturer |
Prof.
Dr. Daniel Huson |
| Office hours |
Mondays, 16-18h, Office C310a, Sand 14 |
| Times |
Mo 10:20-12:00, Mi 11:15-13:00 |
| Credits |
4 SWS lectures+2 SWS Übungen |
| Start |
28. April 2003
|
| Where |
Sand 1, Room A301 |
| Turnus |
yearly in SS |
| Area |
Practical informatics and bioinformatics |
Overview and script:
Algorithmic core problems in bioinformatics, including:
9. HMMs
10. Gene prediction
11. DNA arrays
12. Physical mapping
13. Suffix trees, WOTD algorithm
14. Suffix trees, applications
15. Suffix trees, Ukkonnen's algorithm
16. Sequence assembly
17. Eulerian-path assembly
18. DNA compression
19. Blast, Fast and Blat
Download the script here.
Assignments:
Assignment1
Java
Assignment2
Java
Assignment3
Assignment4
Java
Assignment5
Assignment6
Assignment7
Java
Assignment8
Java
Assignment9
Assignment10
Assignment11
Assignment12
|