Lecturer	Prof. Dr. Daniel Huson
Office hours	Mondays, 16-18h, Office C310a, Sand 14
Times	Lectures: Mo 10-12 Uhr, Mi 10-12 Uhr Prolem sessions: Group 1 (Ulrike von Luxburg): Di 10-12 Uhr Group 2 (Christian Rausch): Mi 15-17 Uhr
Credits	4 SWS lectures+2 SWS Übungen
Start	15. April 2002
Where	Lectures: Sand 1, Raum A301 Group 1: Raum C306, Sand 14 Group 2: Kleiner Hörsaal, Sand 6/7
Turnus	yearly in SS
Area	Practical informatics and bioinformatics

Overview:

Algorithmic core problems in bioinformatics:

1.a Markovketten (in German)
1.b HMMs (in German)
2.a Lazy suffix trees
2.b Ukkonen's algorithm
2.c Applications of suffix trees
3. DNA arrays
4. Sequence assembly
5. Eulerian path assembly
6. Assembly comparison
7. Gene prediction
8. Blast and Blat
9. Phylogenetic networks

Download the script here.

Assignments:

Aufgabenblatt1   Program 1
Aufgabenblatt2   Program 2-4
Aufgabenblatt3
Assignment4   Program5-6
Assignment5   Program7
Assignment6
Assignment7
Assignment8
Assignment9
Assignment10 Program8
Assignment11 Program9

Assignment12 Program10