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Algorithms in Bioinformatics II
Course: Algorithms in Bioinformatics II
| Lecturer | Prof. Dr. Daniel Huson |
| Office hours | Mondays, 16-18h, Office C310a, Sand 14 |
| Times | Lectures: Mo 10-12 Uhr, Mi 10-12 Uhr Prolem sessions: Group 1 (Ulrike von Luxburg): Di 10-12 Uhr Group 2 (Christian Rausch): Mi 15-17 Uhr |
| Credits | 4 SWS lectures+2 SWS Übungen |
| Start | 15. April 2002 |
| Where | Lectures: Sand 1, Raum A301 Group 1: Raum C306, Sand 14 Group 2: Kleiner Hörsaal, Sand 6/7 |
| Turnus | yearly in SS |
| Area | Practical informatics and bioinformatics |
Overview:
Algorithmic core problems in bioinformatics:
1.a Markovketten (in German)
1.b HMMs (in German)
2.a Lazy suffix trees
2.b Ukkonen's algorithm
2.c Applications of suffix trees
3. DNA arrays
4. Sequence assembly
5. Eulerian path assembly
6. Assembly comparison
7. Gene prediction
8. Blast and Blat
9. Phylogenetic networks
Download the script here.
