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Archive
Previous student projects and Bachelor theses undertaken in our lab
| Thema | Name |
| 2002-3 |
|
| Application of scaffolding program to bacterial genomes. (In conjunction with Stephan Schuster at MPI) | Daniel Richter |
| Algorithms for median networks | Markus Franz |
| Implementation of an algorithm for determining the planarity of a phylogenetic network (split graph). | Michael Schroeder |
| Comparison of the human and mouse genomes. | Kristina Hug |
| Comparison of bacterial genomes. | Alexander Auch |
| iPET- Protein alignment
exploration tool
(In conjuction with Andrei Lupas MPI) Algorithms, Software design and User Manual |
Ilka Hoof Christian Klug Georg Zeller |
| Classification of protein subdomains using HMMs (in conjuction with Prof. Wohlleben's group) | Esther Rheinbay |
| 2004 | |
| Visualization of multiple genome comparisons | Anne Arens |
| Intergration of ParSeq hits in annotated genomes (in conjuction with Prof. Goetz's group) | Christiane Nerz |
| XML and Undo/Redo functionality for CGViz | Stephan Ossowski |
| Classification of DNA methyltransferases with Hidden Markov Models | Alexander Thielen |
| Detection of miRNAs in plant genomes | Jó Bitsch |
| A parser for phylogenetic file formats | |
| Visualization of phylogenetic clustering techniques (in conjunction with Prof. Lupas) | |
| Klinische
Expertensysteme: Status Quo und eine spezielle Anwendung im Bereich der
Antibiotikatherapie |
Sascha Wagner |
| Implementation of
standard phylogenetic tree drawing algorithms |
Markus Franz |
| Documentation
and test sets for comparative genomic viewer |
|
| Visualization of
relationships between microRNAs and their targets |
Isabell Schwab |
| Webification of java
applications |
Yang Cheng |
| A Z-closure phylogeny
of cyanobacteria |
Ruijun Shen |
| Prediction
of substrate recognition by nonribosomal peptide synthetase
(NRPS) multi-enzymes and implementation of a predictive
webservice |
Andreas
Biegert |
| 2005 | |
| Finding RNA secondary structure motifs in streptomycetes (in conjuction with Prof. Wohlleben's group) | Markus Zimmermann |
| Analysis of Antibiotic Resistance (in conjuction with Prof. Wohlleben's group) | Christian
Rödelsperger |
| Comparative miRNA prediction in Oryza sativa & Sorghum bicolor | Christian Mayer |
| Blazingly fast detection of similar RNA structures | Michael Remmert |
| Identification of transcription factor binding sites in Arabidopsis thaliana microRNAs | Philipp Thiel |
| MicroRNAs und MITEs in Reis | Marcel Schumann |
| Visualization of non-coding sequence relationships | Martin Schaefer |
| 2006 | |
| Updating known motifs in PKS and NRPS and their
automatic annotation to uncharacterized sequences |
Vassilena Gaykova |
| Phylogenetic Analysis of Single Nucleotide Polymorphisms in Human | Birgit Bammann |
| Library of graph importers and exporters for
phylogenetic networks |
|
| Library of interfaces to phylogenetic software |
|
| Analysis of metagenome data sets |
Nikita Meyer |
| 2007 | |
| Agent-based simulation of genotype and phynotype |
Patrick Kahlert |
| Statistical aspects of metagenome analysis |
Annekatrin Widmann |
| Analysis of metagenome data sets |
Nikita Meyer |
| Mapping of ultra-short reads |
Roland Keller |
