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CGViz Slides

CGViz

CGViz
Agenda
Synteny View: Human-Mouse
DNA assembly assessment
Assembly algorithm visualization
Agenda
CGViz consists of two parts
VizGraph Editor
Component controllers
Plug-in architecture
Agenda
Excellent viewer examples: Ensembl's ContigView
Excellent viewer examples: Sanger's Apollo
Excellent viewer examples: Sanger's ACT
Unique features
Agenda
Agenda
?
Circular view

 

 


CGViz


- a flexible Comparative Genomics
Visualization Tool
Tobias Dezulian
Olaf Delgado
Daniel Huson

27.1.2003
University of Tübingen

 

 


Agenda
  • CGViz - a first Impression
  • Basic concept
  • Unique features
  • Live Demo
  • Questions

 

 

Synteny View: Human-Mouse

 

 

DNA assembly assessment

 

 

Assembly algorithm visualization

 

 


Agenda
  • CGViz - a first Impression
  • Basic concept
  • Unique features
  • Live Demo
  • Questions

 

 


CGViz consists of two parts


Configuration Editor:
the VizGraph

Visualization

 

 


VizGraph Editor


Simple VizGraph 		Component types:
  • Data
  • Transformation
  • Glyph
  • Pane
  • Window:   

 

 


Component controllers


Example: Glyph

Example: Pane

 

 

Plug-in architecture
  • Transformation and Glypg components
    are plug-in containers
  • Plug-ins do the real work
Plug-in Selection in the
Component controller

 

 


Agenda
  • CGViz - a first Impression
  • Basic concept
  • Unique features
  • Live Demo
  • Questions

 

 

Excellent viewer examples:
Ensembl's ContigView

 

 

Excellent viewer examples:
Sanger's Apollo

   

 

 

Excellent viewer examples:
Sanger's ACT

   

 

 

Unique features

  • Visualization configuration by a VizGraph
    • Custom-tailored visualization
    • fast, interactive visual composition
  • Comparative genomic components
    • Glyphs/transformations/Filters
    • Plugin-architecture for fast extensibility

 

flexibility & customizability

 

 


Agenda
  • CGViz - a first Impression
  • Basic concept
  • Unique features
  • Live Demo
  • Questions

 

 


Agenda
  • CGViz - a first Impression
  • Basic concept
  • Unique features
  • Live Demo
  • Questions

 

 

CGViz - a flexible Comparative Genomics Visualization tool






?
Tobias Dezulian
Olaf Delgado
Daniel Huson

27.1.2003
University of Tübingen

 

 

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