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Archive
Past Diploma and Master theses in bioinformatics in our lab:
| Subject | Name | Co-advisor(s) |
| 2003 |
||
| Comparative gene finding | Nora Pierstorff | Dr. Stephan
Schuster (MPI) |
| Whole genome phylogeny | Alexander Auch | Dr. Stefan
Henz and Dr. Stephan
Schuster |
| 2004 | ||
| Comparative genome assembly | Daniel Richter | Dr. Stephan Schuster (MPI) |
| Discovering microRNAs in plant genomes (PDF) | Christian Klug | Prof. Detlef Weigel (MPI) |
| Text mining with eTBlast |
Stephan Ossowski |
Prof. Harold R.
Garner,
(UTexas Southwestern) |
| Phylogenetic networks- there are many definitions of phylogenetic networks, how are they related, which ones are equivalent, how can they be transformed into each other? |
Kristina Hug |
Prof. Pete Lockhart Massey University Palmerston North NZ |
| 2005 |
||
| A phylogenetic test suite |
Joerg Behrend |
Dr. Michael Weiss Spezielle Botanik und Mykologie |
| Screening und partielle Charakterisierung von Biosynthese-Genclustern in Amycolatopsis balhimycina mit bioinformatischen und molekularbiologischen Methoden | Beatrix Weber |
Prof. Wohlleben, Dr. Evi
Stegmann Microbiologie/Biotechnologie |
| Phylogenetic Analysis of Multidomain Proteins in the Order Actinomycetales | Ilka Hoof |
Prof. Wohlleben, Dr.
Tilmann Weber Microbiology/Biotechnology |
| Protein interaction
networks for Arabidopsis |
Nils Krugmann |
Dr. Stefan Henz Prof. Dr. Detlef Weigel (MPI) |
| Bioinformatics support
for resequencing of Arabidopsis |
Georg Zeller | Dr. Stefan Henz, Dr.
Richard Clark (MPI) |
| Expression footprints of
spliced and non-spliced microRNAs |
Michael Schroeder |
Prof. Detlef Weigel (MPI) |
| Biosynthesis KnowledgeBase |
Marion Renner |
Prof. Wohlleben, Dr.
Tilmann Weber Microbiologie/Biotechnologie |
| Structural and
conservational analysis of the centromere, kinetochore and two
components of the spindle checkpoint of the budding yeast Saccharomyces
cerevisiae |
Esther Rheinbay |
Prof. Peter K. Sorger Department of Biology, M.I.T. |
| The
Protein-Interaction-Network of the SNARE family |
Nickias Kienle |
Dr. Dirk Fasshauer (MPI
Göttingen) |
| Integration of
taxonomies in SplitsTree |
Andreas Schmidt |
Prof. David Bryant
(Auckland, NZ) |
| 2006 |
||
| Working title: Protein
specificity prediction using support vector machines and statistical
methods |
Marc Röttig |
Prof. O. Kohlbacher |
| Implementation of a
plugin management system for SplitsTree |
Sabine Luff |
Prof Pete Lockhart
(Massey, NZ) |
| Ultraconservation in
Plants |
Ralf Eilbracht |
Prof. Detlef Weigel (MPI)
|
| Minimal recombination
networks with branch and bound |
Christian Schmidt |
Prof. Dominik Begerow |
| Large-scale
co-phylogenetic analysis |
Jan Meier-Kolthoff |
Dr. Markus Goeker |
| Sequencing Simulator for
454 reads |
Ramona Schmid |
Prof. Mike Steel University of Canterbury, New Zealand |
| Evaluation
of sequence comparison methods and databases for metagenomics |
Hedwig
Zimmerer |
Dr. Markus
Rampp (Rechenzentrum Garching) and Prof. Stephan Schuster (PennState) |
| Implementation of a contig sorting algorithm for OSLay
based on protein data |
Sandra Haupt |
Prof. Wohlleben, Dr.
Tilmann Weber Microbiology/Biotechnology |
